Publications
According to Google Scholar, our publications have been cited more than 25,000 times with an H-index of 33.
Selected
Circular RNAs in the human brain are tailored to neuron identity and neuropsychiatric disease.
Nature communications
·
18 Sep 2023
·
pubmed:37723137
Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.
Nature neuroscience
·
17 Sep 2018
·
pubmed:30224808
Exosome detection via the ultrafast-isolation system: EXODUS.
Nature methods
·
11 Jan 2021
·
pubmed:33432243
Review of multi-omics data resources and integrative analysis for human brain disorders.
Briefings in functional genomics
·
17 Jul 2021
·
pubmed:33969380
powerEQTL: an R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis.
Bioinformatics
·
18 Nov 2021
·
pubmed:34009297
An integrated encyclopedia of DNA elements in the human genome.
Nature
·
06 Sep 2012
·
pubmed:22955616
Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.
Nucleic acids research
·
06 Dec 2009
·
pubmed:19969543
We for the first time identified a set of human exons that can have both functions of coding protein and being enhancers.
All
2025
Genome-wide association meta-regression identifies stem cell lineage orchestration as a key driver of acne risk.
medRxiv : the preprint server for health sciences
·
28 Jun 2025
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pubmed:40666320
EVscope: A Comprehensive Bioinformatics Pipeline for Accurate and Robust Analysis of Total RNA Sequencing from Extracellular Vesicles.
bioRxiv : the preprint server for biology
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27 Jun 2025
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pubmed:40666973
Multi-omics machine learning classifier and blood transcriptomic signature of Parkinson's disease.
Research square
·
20 Jun 2025
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pubmed:40585238
Impact of Y chromosome loss on the risk of Parkinson's disease and progression.
EBioMedicine
·
29 May 2025
·
pubmed:40446401
An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration.
Nature communications
·
20 May 2025
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pubmed:40393985
Biomarker identification for Alzheimer's disease through integration of comprehensive Mendelian randomization and proteomics data.
Journal of translational medicine
·
06 Mar 2025
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pubmed:40050982
Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data.
bioRxiv : the preprint server for biology
·
15 Jan 2025
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pubmed:39185246
2024
Automating life science labs at the single-cell level through precise ultrasonic liquid sample ejection: PULSE.
Microsystems & nanoengineering
·
20 Nov 2024
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pubmed:39567484
Uncovering genetic loci and biological pathways associated with age-related cataracts through GWAS meta-analysis.
Nature communications
·
23 Oct 2024
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pubmed:39438440
ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis.
Nature communications
·
16 Oct 2024
·
pubmed:39414796
An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration.
bioRxiv : the preprint server for biology
·
09 Oct 2024
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pubmed:38559190
Bioinformatics advances in eccDNA identification and analysis.
Oncogene
·
29 Aug 2024
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pubmed:39209966
Plasma and CSF biomarkers of aging and cognitive decline in Caribbean vervets.
Alzheimer's & dementia : the journal of the Alzheimer's Association
·
01 Jul 2024
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pubmed:38946666
Transcriptional pathobiology and multi-omics predictors for Parkinson's disease.
bioRxiv : the preprint server for biology
·
21 Jun 2024
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pubmed:38948706
Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a
Genome research
·
15 May 2024
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pubmed:38599684
Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a
bioRxiv : the preprint server for biology
·
04 Feb 2024
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pubmed:38352559
2023
FLED: a full-length eccDNA detector for long-reads sequencing data
Briefings in bioinformatics
·
22 Sep 2023
·
pubmed:37930031
Circular RNAs in the human brain are tailored to neuron identity and neuropsychiatric disease.
Nature communications
·
18 Sep 2023
·
pubmed:37723137
Large-scale multitrait genome-wide association analyses identify hundreds of glaucoma risk loci.
Nature genetics
·
29 Jun 2023
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pubmed:37386247
Discovery of genomic loci associated with sleep apnea risk through multi-trait GWAS analysis with snoring.
Sleep
·
09 Mar 2023
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pubmed:36525587
2022
WebCSEA: web-based cell-type-specific enrichment analysis of genes.
Nucleic acids research
·
05 Jul 2022
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pubmed:35610053
The Parkinson's disease protein alpha-synuclein is a modulator of processing bodies and mRNA stability.
Cell
·
09 Jun 2022
·
pubmed:35688132
Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.
Nature communications
·
07 Feb 2022
·
pubmed:35132056
2021
powerEQTL: an R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis.
Bioinformatics
·
18 Nov 2021
·
pubmed:34009297
The genetic source tracking of human urinary exosomes.
PNAS
·
26 Oct 2021
·
pubmed:34663731
A pipeline for RNA-seq based eQTL analysis with automated quality control procedures.
BMC bioinformatics
·
25 Aug 2021
·
pubmed:34433407
Review of multi-omics data resources and integrative analysis for human brain disorders.
Briefings in functional genomics
·
17 Jul 2021
·
pubmed:33969380
Understanding the effect of smoking and drinking behavior on Parkinson's disease risk: a Mendelian randomization study.
Scientific reports
·
07 Jul 2021
·
pubmed:34234189
Accelerating Medicines Partnership: Parkinson's Disease. Genetic Resource.
Movement disorders
·
07 May 2021
·
pubmed:33960523
Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.
Nature genetics
·
06 May 2021
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pubmed:33958783
Genetic Modifiers of Age at Onset for Parkinson's Disease in Asians: A Genome-Wide Association Study.
Movement disorders
·
21 Apr 2021
·
pubmed:33884653
Exosome detection via the ultrafast-isolation system: EXODUS.
Nature methods
·
11 Jan 2021
·
pubmed:33432243
2020
High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death.
Physiological genomics
·
14 Sep 2020
·
pubmed:32926651
2019
Publisher Correction: Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.
Nature neuroscience
·
01 Jan 2019
·
pubmed:30482917
2018
Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.
Nature neuroscience
·
17 Sep 2018
·
pubmed:30224808
2017
β2-Adrenoreceptor is a regulator of the α-synuclein gene driving risk of Parkinson's disease.
Science
·
01 Sep 2017
·
pubmed:28860381
2015
The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease.
PloS One
·
04 Dec 2015
·
pubmed:26636336
Association between α-synuclein blood transcripts and early, neuroimaging-supported Parkinson's disease.
Brain
·
28 Jul 2015
·
pubmed:26220939
2014
Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains.
Human molecular genetics
·
05 Dec 2014
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pubmed:25480889
MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis.
PLoS genetics
·
27 Feb 2014
·
pubmed:24586208
Two independent transcription initiation codes overlap on vertebrate core promoters.
Nature
·
16 Feb 2014
·
pubmed:24531765
2013
The correlation between histone modifications and gene expression.
Epigenomics
·
01 Apr 2013
·
pubmed:23566087
An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes.
Molecular cell
·
21 Mar 2013
·
pubmed:23523368
2012
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Nucleic acids research
·
29 Nov 2012
·
pubmed:23203885
An integrated encyclopedia of DNA elements in the human genome.
Nature
·
06 Sep 2012
·
pubmed:22955616
Understanding transcriptional regulation by integrative analysis of transcription factor binding data.
Genome research
·
01 Sep 2012
·
pubmed:22955978
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
Genome research
·
01 Sep 2012
·
pubmed:22955990
Modeling gene expression using chromatin features in various cellular contexts.
Genome biology
·
13 Jun 2012
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pubmed:22950368
2011
Making enhancers from spare parts of the genome.
Genome biology
·
29 Dec 2011
·
pubmed:22206586
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.
Cell
·
23 Dec 2011
·
pubmed:22196727
A user's guide to the encyclopedia of DNA elements (ENCODE)
PLoS biology
·
19 Apr 2011
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pubmed:21526222
2010
Translog, a web browser for studying the expression divergence of homologous genes.
BMC bioinformatics
·
18 Jan 2010
·
pubmed:20122234
2009
Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.
Nucleic acids research
·
06 Dec 2009
·
pubmed:19969543
We for the first time identified a set of human exons that can have both functions of coding protein and being enhancers.
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.
Genome biology
·
21 Aug 2009
·
pubmed:19698106
Transcriptional features of genomic regulatory blocks.
Genome biology
·
19 Apr 2009
·
pubmed:19374772
The brainstorm
IEEE Potentials
·
01 Jan 2009
·
doi:10.1109/mpot.2008.931159
2008
Differential evolution of the 13 Atlantic salmon Hox clusters.
Molecular biology and evolution
·
18 Apr 2008
·
pubmed:18424774
2007
gWord: A Tool for Genome-Wide Word Search and Count
2007 1st International Conference on Bioinformatics and Biomedical Engineering
·
01 Jul 2007
·
doi:10.1109/ICBBE.2007.84